3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4W2F|1|BA|U|474, 4W2F|1|BA|C|482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2F_046 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0504
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4W2F|1|BA|C|32
4W2F|1|BA|U|33
4W2F|1|BA|C|34
4W2F|1|BA|G|35
*
4W2F|1|BA|C|471
4W2F|1|BA|G|472
4W2F|1|BA|A|473
4W2F|1|BA|U|474
4W2F|1|BA|A|475
4W2F|1|BA|G|476
4W2F|1|BA|C|477
4W2F|1|BA|G|478
4W2F|1|BA|C|479
4W2F|1|BA|A|480
4W2F|1|BA|C|481
4W2F|1|BA|C|482
4W2F|1|BA|A|483
4W2F|1|BA|G|484
4W2F|1|BA|U|485
4W2F|1|BA|A|486
4W2F|1|BA|C|487
*
4W2F|1|BA|G|494
4W2F|1|BA|G|495
4W2F|1|BA|A|496
4W2F|1|BA|A|497
4W2F|1|BA|A|498
4W2F|1|BA|G|499

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B7
50S Ribosomal Protein L34
Chain BF
50S Ribosomal Protein L4
Chain BU
50S Ribosomal Protein L20
Chain BX
50S Ribosomal Protein L23

Coloring options:


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