J3_4W2F_060

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_060 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1649

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4W2F|1|CA|C|990
4W2F|1|CA|U|991
4W2F|1|CA|U|992
4W2F|1|CA|G|993
4W2F|1|CA|A|994
4W2F|1|CA|C|995
4W2F|1|CA|A|996
4W2F|1|CA|U|997
*
4W2F|1|CA|A|1044
4W2F|1|CA|C|1045
4W2F|1|CA|A|1046
4W2F|1|CA|G|1047
*
4W2F|1|CA|C|1210
4W2F|1|CA|U|1211
4W2F|1|CA|U|1212
4W2F|1|CA|A|1213
4W2F|1|CA|C|1214
4W2F|1|CA|G|1215

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S Ribosomal Protein S14