3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4W2F|1|DA|U|504, 4W2F|1|DA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2F_064 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0545
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4W2F|1|DA|G|30
4W2F|1|DA|C|31
*
4W2F|1|DA|G|474
4W2F|1|DA|U|475
4W2F|1|DA|G|476
4W2F|1|DA|A|477
4W2F|1|DA|A|478
4W2F|1|DA|A|479
4W2F|1|DA|A|480
4W2F|1|DA|G|481
4W2F|1|DA|A|482
4W2F|1|DA|A|483
4W2F|1|DA|C|484
*
4W2F|1|DA|G|496
4W2F|1|DA|A|497
4W2F|1|DA|G|498
4W2F|1|DA|U|499
4W2F|1|DA|G|500
4W2F|1|DA|A|501
4W2F|1|DA|A|502
4W2F|1|DA|A|503
4W2F|1|DA|U|504
4W2F|1|DA|A|505
4W2F|1|DA|G|506
4W2F|1|DA|A|507
4W2F|1|DA|G|508
4W2F|1|DA|C|509
4W2F|1|DA|C|510

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DU
50S Ribosomal Protein L20
Chain DW
50S Ribosomal Protein L22
Chain DY
50S Ribosomal Protein L24

Coloring options:


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