J3_4W2F_073

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4W2F|1|DA|G|2833, 4W2F|1|DA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_073 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.1655

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4W2F|1|DA|C|2814
4W2F|1|DA|C|2815
*
4W2F|1|DA|G|2831
4W2F|1|DA|U|2832
4W2F|1|DA|G|2833
4W2F|1|DA|G|2834
4W2F|1|DA|A|2835
4W2F|1|DA|U|2836
*
4W2F|1|DA|A|2882
4W2F|1|DA|A|2883
4W2F|1|DA|U|2884
4W2F|1|DA|C|2885
4W2F|1|DA|G|2886

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3

Chain DR

50S Ribosomal Protein L17