J3_4W2G_017

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4W2G|1|CA|U|871, 4W2G|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2G_017 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0714

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4W2G|1|CA|C|826
4W2G|1|CA|U|827
4W2G|1|CA|A|828
4W2G|1|CA|G|829
*
4W2G|1|CA|C|857
4W2G|1|CA|G|858
4W2G|1|CA|A|859
4W2G|1|CA|A|860
4W2G|1|CA|G|861
*
4W2G|1|CA|C|868
4W2G|1|CA|G|869
4W2G|1|CA|U|870
4W2G|1|CA|U|871
4W2G|1|CA|A|872
4W2G|1|CA|A|873
4W2G|1|CA|G|874

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal Protein S2

Chain CH

30S Ribosomal Protein S8