3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4W2G|1|DA|C|34, 4W2G|1|DA|U|448, 4W2G|1|DA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2G_062 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0708
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4W2G|1|DA|C|32
4W2G|1|DA|U|33
4W2G|1|DA|C|34
4W2G|1|DA|G|35
*
4W2G|1|DA|C|445
4W2G|1|DA|G|446
4W2G|1|DA|A|447
4W2G|1|DA|U|448
4W2G|1|DA|A|449
4W2G|1|DA|G|450
4W2G|1|DA|C|451
4W2G|1|DA|G|452
4W2G|1|DA|C|453
4W2G|1|DA|A|454
4W2G|1|DA|C|455
4W2G|1|DA|C|456
4W2G|1|DA|A|457
4W2G|1|DA|G|458
4W2G|1|DA|U|459
4W2G|1|DA|A|460
4W2G|1|DA|C|461
*
4W2G|1|DA|G|468
4W2G|1|DA|G|469
4W2G|1|DA|A|470
4W2G|1|DA|A|471
4W2G|1|DA|A|472
4W2G|1|DA|G|473

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D7
50S Ribosomal Protein L34
Chain DF
50S Ribosomal Protein L4
Chain DU
50S Ribosomal Protein L20
Chain DX
50S Ribosomal Protein L23

Coloring options:


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