J3_4W2I_018

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4W2I|1|CA|U|871, 4W2I|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2I_018 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0619

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4W2I|1|CA|C|826
4W2I|1|CA|U|827
4W2I|1|CA|A|828
4W2I|1|CA|G|829
*
4W2I|1|CA|C|857
4W2I|1|CA|G|858
4W2I|1|CA|A|859
4W2I|1|CA|A|860
4W2I|1|CA|G|861
*
4W2I|1|CA|C|868
4W2I|1|CA|G|869
4W2I|1|CA|U|870
4W2I|1|CA|U|871
4W2I|1|CA|A|872
4W2I|1|CA|A|873
4W2I|1|CA|G|874

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal Protein S2

Chain CH

30S Ribosomal Protein S8