J3_4W2I_044
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4W2I|1|BA|U|529, 4W2I|1|BA|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2I_044 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0441
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4W2I|1|BA|G|30
4W2I|1|BA|C|31
*
4W2I|1|BA|G|500
4W2I|1|BA|U|501
4W2I|1|BA|G|502
4W2I|1|BA|A|503
4W2I|1|BA|A|504
4W2I|1|BA|A|505
4W2I|1|BA|A|506
4W2I|1|BA|G|507
4W2I|1|BA|A|508
4W2I|1|BA|A|509
4W2I|1|BA|C|510
*
4W2I|1|BA|G|521
4W2I|1|BA|A|522
4W2I|1|BA|G|523
4W2I|1|BA|U|524
4W2I|1|BA|G|525
4W2I|1|BA|A|526
4W2I|1|BA|A|527
4W2I|1|BA|A|528
4W2I|1|BA|U|529
4W2I|1|BA|A|530
4W2I|1|BA|G|531
4W2I|1|BA|A|532
4W2I|1|BA|G|533
4W2I|1|BA|C|534
4W2I|1|BA|C|535
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BU
- 50S Ribosomal Protein L20
- Chain BW
- 50S Ribosomal Protein L22
- Chain BY
- 50S Ribosomal Protein L24
Coloring options: