J3_4W2I_052
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 4W2I|1|BA|G|2843, 4W2I|1|BA|A|2845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2I_052 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.13
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4W2I|1|BA|C|2824
4W2I|1|BA|C|2825
*
4W2I|1|BA|G|2841
4W2I|1|BA|U|2842
4W2I|1|BA|G|2843
4W2I|1|BA|G|2844
4W2I|1|BA|A|2845
4W2I|1|BA|U|2846
*
4W2I|1|BA|A|2892
4W2I|1|BA|A|2893
4W2I|1|BA|U|2894
4W2I|1|BA|C|2895
4W2I|1|BA|G|2896
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- 50S Ribosomal Protein L32
- Chain BE
- 50S Ribosomal Protein L3
- Chain BR
- 50S Ribosomal Protein L17
Coloring options: