J3_4W4G_001

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4W4G|1|QA|U|871, 4W4G|1|QA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0979

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4W4G|1|QA|C|826
4W4G|1|QA|U|827
4W4G|1|QA|A|828
4W4G|1|QA|G|829
*
4W4G|1|QA|C|857
4W4G|1|QA|G|858
4W4G|1|QA|A|859
4W4G|1|QA|A|860
4W4G|1|QA|G|861
*
4W4G|1|QA|C|868
4W4G|1|QA|G|869
4W4G|1|QA|U|870
4W4G|1|QA|U|871
4W4G|1|QA|A|872
4W4G|1|QA|A|873
4W4G|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8