J3_4W4G_012

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

4W4G|1|RA|A|1084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_012 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.3573

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4W4G|1|RA|G|1055
4W4G|1|RA|G|1056
4W4G|1|RA|A|1057
*
4W4G|1|RA|U|1081
4W4G|1|RA|U|1082
4W4G|1|RA|U|1083
4W4G|1|RA|A|1084
4W4G|1|RA|A|1085
4W4G|1|RA|A|1086
4W4G|1|RA|G|1087
*
4W4G|1|RA|C|1102
4W4G|1|RA|A|1103
4W4G|1|RA|C|1104

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36