3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
4W4G|1|QA|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W4G_039 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.0699
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4W4G|1|QA|C|586
4W4G|1|QA|G|587
4W4G|1|QA|G|588
*
4W4G|1|QA|C|651
4W4G|1|QA|U|652
4W4G|1|QA|A|653
4W4G|1|QA|G|654
4W4G|1|QA|A|655
*
4W4G|1|QA|U|751
4W4G|1|QA|G|752
4W4G|1|QA|A|753
4W4G|1|QA|C|754
4W4G|1|QA|G|755

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QH
30S ribosomal protein S8
Chain QL
30S ribosomal protein S12
Chain QO
30S ribosomal protein S15
Chain QQ
30S ribosomal protein S17

Coloring options:


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