J3_4W4G_045

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4W4G|1|RA|U|504, 4W4G|1|RA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_045 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0655

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4W4G|1|RA|G|30
4W4G|1|RA|C|31
*
4W4G|1|RA|G|474
4W4G|1|RA|U|475
4W4G|1|RA|G|476
4W4G|1|RA|A|477
4W4G|1|RA|A|478
4W4G|1|RA|A|479
4W4G|1|RA|A|480
4W4G|1|RA|G|481
4W4G|1|RA|A|482
4W4G|1|RA|A|483
4W4G|1|RA|C|484
*
4W4G|1|RA|G|496
4W4G|1|RA|A|497
4W4G|1|RA|G|498
4W4G|1|RA|U|499
4W4G|1|RA|G|500
4W4G|1|RA|A|501
4W4G|1|RA|A|502
4W4G|1|RA|A|503
4W4G|1|RA|U|504
4W4G|1|RA|A|505
4W4G|1|RA|G|506
4W4G|1|RA|A|507
4W4G|1|RA|G|508
4W4G|1|RA|C|509
4W4G|1|RA|C|510

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22

Chain RY

50S ribosomal protein L24