J3_4W92_002

3D structure

PDB id

4W92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UUAAU*AG*UAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W92_002 not in the Motif Atlas

Homologous match to J3_4W90_002

Geometric discrepancy: 0.0918

The information below is about J3_4W90_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48248.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4W92|1|C|U|7
4W92|1|C|U|8
4W92|1|C|A|9
4W92|1|C|A|10
4W92|1|C|U|11
*
4W92|1|C|A|22
4W92|1|C|G|23
*
4W92|1|C|U|111
4W92|1|C|A|112
4W92|1|C|A|113

Current chains

Chain C

C-di-AMP ribsoswitch

Nearby chains