J3_4WF1_012

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

4WF1|1|BA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_012 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0513

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WF1|1|BA|C|1298
4WF1|1|BA|G|1299
4WF1|1|BA|G|1300
4WF1|1|BA|A|1301
4WF1|1|BA|A|1302
4WF1|1|BA|G|1303
*
4WF1|1|BA|C|1625
4WF1|1|BA|A|1626
4WF1|1|BA|G|1627
*
4WF1|1|BA|C|1639
4WF1|1|BA|A|1640
4WF1|1|BA|A|1641
4WF1|1|BA|G|1642

Current chains

Chain BA

23S rRNA

Nearby chains