J3_4WF1_057

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_057 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0496

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WF1|1|BA|G|1424
4WF1|1|BA|G|1425
4WF1|1|BA|G|1426
4WF1|1|BA|A|1427
4WF1|1|BA|C|1428
4WF1|1|BA|G|1429
*
4WF1|1|BA|C|1564
4WF1|1|BA|C|1565
*
4WF1|1|BA|G|1568
4WF1|1|BA|A|1569
4WF1|1|BA|A|1570
4WF1|1|BA|A|1571
4WF1|1|BA|A|1572
4WF1|1|BA|G|1573
4WF1|1|BA|C|1574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2