J3_4WFB_017

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

4WFB|1|X|U|2853, 4WFB|1|X|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_017 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.1114

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WFB|1|X|C|2834
4WFB|1|X|C|2835
*
4WFB|1|X|G|2851
4WFB|1|X|U|2852
4WFB|1|X|U|2853
4WFB|1|X|A|2854
4WFB|1|X|A|2855
4WFB|1|X|U|2856
*
4WFB|1|X|A|2902
4WFB|1|X|A|2903
4WFB|1|X|U|2904
4WFB|1|X|C|2905
4WFB|1|X|G|2906

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain Z

50S ribosomal protein L32