J3_4WOI_010

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4WOI|1|AA|U|1240, 4WOI|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_010 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1314

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|AA|C|1237
4WOI|1|AA|A|1238
4WOI|1|AA|A|1239
4WOI|1|AA|U|1240
4WOI|1|AA|G|1241
*
4WOI|1|AA|C|1296
4WOI|1|AA|G|1297
4WOI|1|AA|U|1298
4WOI|1|AA|A|1299
4WOI|1|AA|G|1300
4WOI|1|AA|U|1301
4WOI|1|AA|C|1302
4WOI|1|AA|C|1303
*
4WOI|1|AA|G|1334
4WOI|1|AA|U|1335
4WOI|1|AA|C|1336
4WOI|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13