J3_4WOI_031

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WOI|1|DA|U|871, 4WOI|1|DA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_031 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0645

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WOI|1|DA|C|826
4WOI|1|DA|U|827
4WOI|1|DA|U|828
4WOI|1|DA|G|829
*
4WOI|1|DA|C|857
4WOI|1|DA|G|858
4WOI|1|DA|G|859
4WOI|1|DA|A|860
4WOI|1|DA|G|861
*
4WOI|1|DA|C|868
4WOI|1|DA|G|869
4WOI|1|DA|U|870
4WOI|1|DA|U|871
4WOI|1|DA|A|872
4WOI|1|DA|A|873
4WOI|1|DA|G|874

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DH

30S ribosomal protein S8

Chain DU

30S ribosomal protein S21