J3_4WOI_040

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4WOI|1|AA|C|48, 4WOI|1|AA|A|50, 4WOI|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_040 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0761

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|AA|G|46
4WOI|1|AA|C|47
4WOI|1|AA|C|48
4WOI|1|AA|U|49
4WOI|1|AA|A|50
4WOI|1|AA|A|51
4WOI|1|AA|C|52
*
4WOI|1|AA|G|359
4WOI|1|AA|G|360
4WOI|1|AA|G|361
4WOI|1|AA|G|362
4WOI|1|AA|A|363
4WOI|1|AA|A|364
4WOI|1|AA|U|365
4WOI|1|AA|A|366
4WOI|1|AA|U|367
*
4WOI|1|AA|A|393
4WOI|1|AA|G|394
4WOI|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16