J3_4WPO_010

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WPO|1|BA|U|871, 4WPO|1|BA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_010 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.058

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WPO|1|BA|C|826
4WPO|1|BA|U|827
4WPO|1|BA|A|828
4WPO|1|BA|G|829
*
4WPO|1|BA|C|857
4WPO|1|BA|G|858
4WPO|1|BA|A|859
4WPO|1|BA|A|860
4WPO|1|BA|G|861
*
4WPO|1|BA|C|868
4WPO|1|BA|G|869
4WPO|1|BA|U|870
4WPO|1|BA|U|871
4WPO|1|BA|A|872
4WPO|1|BA|A|873
4WPO|1|BA|G|874

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BH

30S ribosomal protein S8