J3_4WPO_037

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WPO|1|AA|U|529, 4WPO|1|AA|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_037 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0408

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WPO|1|AA|G|30
4WPO|1|AA|C|31
*
4WPO|1|AA|G|500
4WPO|1|AA|U|501
4WPO|1|AA|G|502
4WPO|1|AA|A|503
4WPO|1|AA|A|504
4WPO|1|AA|A|505
4WPO|1|AA|A|506
4WPO|1|AA|G|507
4WPO|1|AA|A|508
4WPO|1|AA|A|509
4WPO|1|AA|C|510
*
4WPO|1|AA|G|521
4WPO|1|AA|A|522
4WPO|1|AA|G|523
4WPO|1|AA|U|524
4WPO|1|AA|G|525
4WPO|1|AA|A|526
4WPO|1|AA|A|527
4WPO|1|AA|A|528
4WPO|1|AA|U|529
4WPO|1|AA|A|530
4WPO|1|AA|G|531
4WPO|1|AA|A|532
4WPO|1|AA|G|533
4WPO|1|AA|C|534
4WPO|1|AA|C|535

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24