J3_4WPO_052

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WPO|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_052 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1502

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WPO|1|BA|C|990
4WPO|1|BA|U|991
4WPO|1|BA|U|992
4WPO|1|BA|G|993
4WPO|1|BA|A|994
4WPO|1|BA|C|995
4WPO|1|BA|A|996
4WPO|1|BA|U|997
*
4WPO|1|BA|A|1044
4WPO|1|BA|C|1045
4WPO|1|BA|A|1046
4WPO|1|BA|G|1047
*
4WPO|1|BA|C|1210
4WPO|1|BA|U|1211
4WPO|1|BA|U|1212
4WPO|1|BA|A|1213
4WPO|1|BA|C|1214
4WPO|1|BA|G|1215

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S14 type Z

Chain BZ

50S ribosomal protein L9,Elongation factor G