3D structure

PDB id
4WPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4WPO|1|CA|C|34, 4WPO|1|CA|U|448, 4WPO|1|CA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WPO_057 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0693
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4WPO|1|CA|C|32
4WPO|1|CA|U|33
4WPO|1|CA|C|34
4WPO|1|CA|G|35
*
4WPO|1|CA|C|445
4WPO|1|CA|G|446
4WPO|1|CA|A|447
4WPO|1|CA|U|448
4WPO|1|CA|A|449
4WPO|1|CA|G|450
4WPO|1|CA|C|451
4WPO|1|CA|G|452
4WPO|1|CA|C|453
4WPO|1|CA|A|454
4WPO|1|CA|C|455
4WPO|1|CA|C|456
4WPO|1|CA|A|457
4WPO|1|CA|G|458
4WPO|1|CA|U|459
4WPO|1|CA|A|460
4WPO|1|CA|C|461
*
4WPO|1|CA|G|468
4WPO|1|CA|G|469
4WPO|1|CA|A|470
4WPO|1|CA|A|471
4WPO|1|CA|A|472
4WPO|1|CA|G|473

Current chains

Chain CA
23S Ribosomal RNA

Nearby chains

Chain C7
50S ribosomal protein L34
Chain CF
50S ribosomal protein L4
Chain CU
50S ribosomal protein L20
Chain CX
50S ribosomal protein L23

Coloring options:


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