J3_4WPO_064

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4WPO|1|CA|G|2833, 4WPO|1|CA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_064 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1607

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WPO|1|CA|C|2814
4WPO|1|CA|C|2815
*
4WPO|1|CA|G|2831
4WPO|1|CA|U|2832
4WPO|1|CA|G|2833
4WPO|1|CA|G|2834
4WPO|1|CA|A|2835
4WPO|1|CA|U|2836
*
4WPO|1|CA|A|2882
4WPO|1|CA|A|2883
4WPO|1|CA|U|2884
4WPO|1|CA|C|2885
4WPO|1|CA|G|2886

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CR

50S ribosomal protein L17