J3_4WQ1_001

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WQ1|1|13|U|871, 4WQ1|1|13|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0756

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WQ1|1|13|C|826
4WQ1|1|13|U|827
4WQ1|1|13|A|828
4WQ1|1|13|G|829
*
4WQ1|1|13|C|857
4WQ1|1|13|G|858
4WQ1|1|13|A|859
4WQ1|1|13|A|860
4WQ1|1|13|G|861
*
4WQ1|1|13|C|868
4WQ1|1|13|G|869
4WQ1|1|13|U|870
4WQ1|1|13|U|871
4WQ1|1|13|A|872
4WQ1|1|13|A|873
4WQ1|1|13|G|874

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 7E

30S ribosomal protein S8