3D structure

PDB id
4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
4WQ1|1|13|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WQ1_040 not in the Motif Atlas
Homologous match to J3_4LFB_012
Geometric discrepancy: 0.1051
The information below is about J3_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4WQ1|1|13|U|672
4WQ1|1|13|G|673
*
4WQ1|1|13|C|717
4WQ1|1|13|G|718
4WQ1|1|13|C|719
4WQ1|1|13|C|720
4WQ1|1|13|G|721
4WQ1|1|13|A|722
4WQ1|1|13|U|723
4WQ1|1|13|G|724
4WQ1|1|13|G|725
*
4WQ1|1|13|C|732
4WQ1|1|13|A|733
4WQ1|1|13|G|734

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 2I
30S ribosomal protein S11
Chain 5E
30S ribosomal protein S6
Chain 6I
30S ribosomal protein S15
Chain 9I
30S ribosomal protein S18

Coloring options:


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