J3_4WQR_018
3D structure
- PDB id
- 4WQR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4WQR|1|1G|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WQR_018 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.1562
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4WQR|1|1G|C|826
4WQR|1|1G|U|827
4WQR|1|1G|A|828
4WQR|1|1G|G|829
*
4WQR|1|1G|C|857
4WQR|1|1G|G|858
4WQR|1|1G|A|859
4WQR|1|1G|A|860
4WQR|1|1G|G|861
*
4WQR|1|1G|C|868
4WQR|1|1G|G|869
4WQR|1|1G|U|870
4WQR|1|1G|U|871
4WQR|1|1G|A|872
4WQR|1|1G|A|873
4WQR|1|1G|G|874
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 12
- 30S ribosomal protein S2
- Chain 42
- 30S ribosomal protein S5
- Chain 72
- 30S ribosomal protein S8
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