J3_4WQR_040

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WQR|1|13|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQR_040 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1421

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WQR|1|13|C|990
4WQR|1|13|U|991
4WQR|1|13|U|992
4WQR|1|13|G|993
4WQR|1|13|A|994
4WQR|1|13|C|995
4WQR|1|13|A|996
4WQR|1|13|U|997
*
4WQR|1|13|A|1044
4WQR|1|13|C|1045
4WQR|1|13|A|1046
4WQR|1|13|G|1047
*
4WQR|1|13|C|1210
4WQR|1|13|U|1211
4WQR|1|13|U|1212
4WQR|1|13|A|1213
4WQR|1|13|C|1214
4WQR|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z