J3_4WQU_028

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WQU|1|DA|U|871, 4WQU|1|DA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_028 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0745

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WQU|1|DA|C|826
4WQU|1|DA|U|827
4WQU|1|DA|A|828
4WQU|1|DA|G|829
*
4WQU|1|DA|C|857
4WQU|1|DA|G|858
4WQU|1|DA|A|859
4WQU|1|DA|A|860
4WQU|1|DA|G|861
*
4WQU|1|DA|C|868
4WQU|1|DA|G|869
4WQU|1|DA|U|870
4WQU|1|DA|U|871
4WQU|1|DA|A|872
4WQU|1|DA|A|873
4WQU|1|DA|G|874

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DH

30S ribosomal protein S8