J3_4WQU_038

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQU|1|AA|U|529, 4WQU|1|AA|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_038 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0424

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WQU|1|AA|G|30
4WQU|1|AA|C|31
*
4WQU|1|AA|G|500
4WQU|1|AA|U|501
4WQU|1|AA|G|502
4WQU|1|AA|A|503
4WQU|1|AA|A|504
4WQU|1|AA|A|505
4WQU|1|AA|A|506
4WQU|1|AA|G|507
4WQU|1|AA|A|508
4WQU|1|AA|A|509
4WQU|1|AA|C|510
*
4WQU|1|AA|G|521
4WQU|1|AA|A|522
4WQU|1|AA|G|523
4WQU|1|AA|U|524
4WQU|1|AA|G|525
4WQU|1|AA|A|526
4WQU|1|AA|A|527
4WQU|1|AA|A|528
4WQU|1|AA|U|529
4WQU|1|AA|A|530
4WQU|1|AA|G|531
4WQU|1|AA|A|532
4WQU|1|AA|G|533
4WQU|1|AA|C|534
4WQU|1|AA|C|535

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24