J3_4WQU_047

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4WQU|1|AA|G|2843, 4WQU|1|AA|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_047 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.0974

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|AA|C|2824
4WQU|1|AA|C|2825
*
4WQU|1|AA|G|2841
4WQU|1|AA|U|2842
4WQU|1|AA|G|2843
4WQU|1|AA|G|2844
4WQU|1|AA|A|2845
4WQU|1|AA|U|2846
*
4WQU|1|AA|A|2892
4WQU|1|AA|A|2893
4WQU|1|AA|U|2894
4WQU|1|AA|C|2895
4WQU|1|AA|G|2896

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L17