J3_4WQU_060

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQU|1|CA|U|504, 4WQU|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_060 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0559

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WQU|1|CA|G|30
4WQU|1|CA|C|31
*
4WQU|1|CA|G|474
4WQU|1|CA|U|475
4WQU|1|CA|G|476
4WQU|1|CA|A|477
4WQU|1|CA|A|478
4WQU|1|CA|A|479
4WQU|1|CA|A|480
4WQU|1|CA|G|481
4WQU|1|CA|A|482
4WQU|1|CA|A|483
4WQU|1|CA|C|484
*
4WQU|1|CA|G|496
4WQU|1|CA|A|497
4WQU|1|CA|G|498
4WQU|1|CA|U|499
4WQU|1|CA|G|500
4WQU|1|CA|A|501
4WQU|1|CA|A|502
4WQU|1|CA|A|503
4WQU|1|CA|U|504
4WQU|1|CA|A|505
4WQU|1|CA|G|506
4WQU|1|CA|A|507
4WQU|1|CA|G|508
4WQU|1|CA|C|509
4WQU|1|CA|C|510

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24