J3_4WQU_085

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WQU|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_085 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1733

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|BA|C|990
4WQU|1|BA|U|991
4WQU|1|BA|U|992
4WQU|1|BA|G|993
4WQU|1|BA|A|994
4WQU|1|BA|C|995
4WQU|1|BA|A|996
4WQU|1|BA|U|997
*
4WQU|1|BA|A|1044
4WQU|1|BA|C|1045
4WQU|1|BA|A|1046
4WQU|1|BA|G|1047
*
4WQU|1|BA|C|1210
4WQU|1|BA|U|1211
4WQU|1|BA|U|1212
4WQU|1|BA|A|1213
4WQU|1|BA|C|1214
4WQU|1|BA|G|1215

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S14 type Z

Chain BZ

50S ribosomal protein L9,Elongation factor G