J3_4WQY_009

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

4WQY|1|AA|A|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_009 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1005

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WQY|1|AA|C|2802
4WQY|1|AA|A|2803
4WQY|1|AA|C|2804
*
4WQY|1|AA|G|2816
4WQY|1|AA|G|2817
4WQY|1|AA|U|2818
4WQY|1|AA|A|2819
4WQY|1|AA|A|2820
4WQY|1|AA|G|2821
*
4WQY|1|AA|C|2899
4WQY|1|AA|G|2900
4WQY|1|AA|A|2901
4WQY|1|AA|G|2902
4WQY|1|AA|G|2903

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AW

50S ribosomal protein L22