J3_4WQY_026

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WQY|1|CA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_026 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0636

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQY|1|CA|C|2517
4WQY|1|CA|A|2518
4WQY|1|CA|U|2519
4WQY|1|CA|C|2520
*
4WQY|1|CA|G|2545
4WQY|1|CA|U|2546
4WQY|1|CA|U|2547
*
4WQY|1|CA|A|2561
4WQY|1|CA|U|2562
4WQY|1|CA|U|2563
4WQY|1|CA|A|2564
4WQY|1|CA|A|2565
4WQY|1|CA|A|2566
4WQY|1|CA|G|2567

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CN

50S ribosomal protein L13

Chain CO

50S ribosomal protein L14