J3_4WQY_041

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WQY|1|AA|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_041 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0649

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQY|1|AA|G|1390
4WQY|1|AA|C|1391
4WQY|1|AA|G|1392
4WQY|1|AA|G|1393
4WQY|1|AA|G|1394
4WQY|1|AA|A|1395
4WQY|1|AA|C|1396
*
4WQY|1|AA|G|1427
4WQY|1|AA|G|1428
4WQY|1|AA|C|1429
4WQY|1|AA|A|1430
4WQY|1|AA|G|1431
*
4WQY|1|AA|C|1448
4WQY|1|AA|C|1449

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L23