J3_4WQY_055

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQY|1|CA|U|504, 4WQY|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_055 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0584

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQY|1|CA|G|30
4WQY|1|CA|C|31
*
4WQY|1|CA|G|474
4WQY|1|CA|U|475
4WQY|1|CA|G|476
4WQY|1|CA|A|477
4WQY|1|CA|A|478
4WQY|1|CA|A|479
4WQY|1|CA|A|480
4WQY|1|CA|G|481
4WQY|1|CA|A|482
4WQY|1|CA|A|483
4WQY|1|CA|C|484
*
4WQY|1|CA|G|496
4WQY|1|CA|A|497
4WQY|1|CA|G|498
4WQY|1|CA|U|499
4WQY|1|CA|G|500
4WQY|1|CA|A|501
4WQY|1|CA|A|502
4WQY|1|CA|A|503
4WQY|1|CA|U|504
4WQY|1|CA|A|505
4WQY|1|CA|G|506
4WQY|1|CA|A|507
4WQY|1|CA|G|508
4WQY|1|CA|C|509
4WQY|1|CA|C|510

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24