J3_4WQY_056

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WQY|1|CA|U|448, 4WQY|1|CA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0729

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

4WQY|1|CA|C|32
4WQY|1|CA|U|33
4WQY|1|CA|C|34
4WQY|1|CA|G|35
*
4WQY|1|CA|C|445
4WQY|1|CA|G|446
4WQY|1|CA|A|447
4WQY|1|CA|U|448
4WQY|1|CA|A|449
4WQY|1|CA|G|450
4WQY|1|CA|C|451
4WQY|1|CA|G|452
4WQY|1|CA|C|453
4WQY|1|CA|A|454
4WQY|1|CA|C|455
4WQY|1|CA|C|456
4WQY|1|CA|A|457
4WQY|1|CA|G|458
4WQY|1|CA|U|459
4WQY|1|CA|A|460
4WQY|1|CA|C|461
*
4WQY|1|CA|G|468
4WQY|1|CA|G|469
4WQY|1|CA|A|470
4WQY|1|CA|A|471
4WQY|1|CA|A|472
4WQY|1|CA|G|473

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CF

50S ribosomal protein L4

Chain CU

50S ribosomal protein L20

Chain CX

50S ribosomal protein L23