J3_4WQY_059

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WQY|1|CA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0737

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQY|1|CA|C|297
4WQY|1|CA|G|298
4WQY|1|CA|A|299
4WQY|1|CA|A|300
4WQY|1|CA|G|301
*
4WQY|1|CA|C|316
4WQY|1|CA|G|317
4WQY|1|CA|C|318
4WQY|1|CA|C|319
4WQY|1|CA|A|320
4WQY|1|CA|G|321
4WQY|1|CA|A|322
4WQY|1|CA|G|323
4WQY|1|CA|A|324
4WQY|1|CA|G|325
*
4WQY|1|CA|C|337
4WQY|1|CA|G|338
4WQY|1|CA|U|339
4WQY|1|CA|A|340
4WQY|1|CA|G|341

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CY

50S ribosomal protein L24