J3_4WQY_062

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0702

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WQY|1|CA|G|1424
4WQY|1|CA|G|1425
4WQY|1|CA|G|1426
4WQY|1|CA|A|1427
4WQY|1|CA|C|1428
4WQY|1|CA|G|1429
*
4WQY|1|CA|C|1564
4WQY|1|CA|C|1565
*
4WQY|1|CA|G|1568
4WQY|1|CA|A|1569
4WQY|1|CA|A|1570
4WQY|1|CA|A|1571
4WQY|1|CA|A|1572
4WQY|1|CA|G|1573
4WQY|1|CA|C|1574

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2