J3_4WQY_066

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_066 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.2053

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4WQY|1|DA|G|46
4WQY|1|DA|C|47
*
4WQY|1|DA|G|361
4WQY|1|DA|G|362
4WQY|1|DA|A|363
4WQY|1|DA|A|364
4WQY|1|DA|U|365
4WQY|1|DA|C|366
4WQY|1|DA|U|367
*
4WQY|1|DA|A|393
4WQY|1|DA|G|394
4WQY|1|DA|C|395

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DP

30S ribosomal protein S16

Chain DZ

50S ribosomal protein L9,Elongation factor G