J3_4WR6_025

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

4WR6|1|1G|G|1190||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WR6_025 not in the Motif Atlas

Geometric match to J3_4LFB_007

Geometric discrepancy: 0.1285

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WR6|1|1G|C|1063||||P_1
4WR6|1|1G|G|1064||||P_1
4WR6|1|1G|U|1065||||P_1
4WR6|1|1G|C|1066||||P_1
4WR6|1|1G|A|1067||||P_1
4WR6|1|1G|G|1068||||P_1
*
4WR6|1|1G|C|1107||||P_1
4WR6|1|1G|G|1108||||P_1
4WR6|1|1G|C|1109||||P_1
4WR6|1|1G|A|1110||||P_1
4WR6|1|1G|A|1111||||P_1
4WR6|1|1G|C|1112||||P_1
4WR6|1|1G|C|1113||||P_1
*
4WR6|1|1G|G|1187||||P_1
4WR6|1|1G|A|1188||||P_1
4WR6|1|1G|C|1189||||P_1
4WR6|1|1G|G|1190||||P_1
4WR6|1|1G|A|1191||||P_1
4WR6|1|1G|C|1192||||P_1
4WR6|1|1G|G|1193||||P_1

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 1A

30S ribosomal protein S10

Chain 22

30S ribosomal protein S3

Chain 42

30S ribosomal protein S5

Chain 5A

30S ribosomal protein S14

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9