J3_4WR6_045

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WR6|1|14|C|34||||P_1, 4WR6|1|14|U|448||||P_1, 4WR6|1|14|C|456||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WR6_045 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1253

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4WR6|1|14|C|32||||P_1
4WR6|1|14|U|33||||P_1
4WR6|1|14|C|34||||P_1
4WR6|1|14|G|35||||P_1
*
4WR6|1|14|C|445||||P_1
4WR6|1|14|G|446||||P_1
4WR6|1|14|A|447||||P_1
4WR6|1|14|U|448||||P_1
4WR6|1|14|A|449||||P_1
4WR6|1|14|G|450||||P_1
4WR6|1|14|C|451||||P_1
4WR6|1|14|G|452||||P_1
4WR6|1|14|C|453||||P_1
4WR6|1|14|A|454||||P_1
4WR6|1|14|C|455||||P_1
4WR6|1|14|C|456||||P_1
4WR6|1|14|A|457||||P_1
4WR6|1|14|G|458||||P_1
4WR6|1|14|U|459||||P_1
4WR6|1|14|A|460||||P_1
4WR6|1|14|C|461||||P_1
*
4WR6|1|14|G|468||||P_1
4WR6|1|14|G|469||||P_1
4WR6|1|14|A|470||||P_1
4WR6|1|14|A|471||||P_1
4WR6|1|14|A|472||||P_1
4WR6|1|14|G|473||||P_1

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain 85

50S ribosomal protein L20

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34