J3_4WRA_043

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WRA|1|14|U|504, 4WRA|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_043 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0731

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WRA|1|14|G|30
4WRA|1|14|C|31
*
4WRA|1|14|G|474
4WRA|1|14|U|475
4WRA|1|14|G|476
4WRA|1|14|A|477
4WRA|1|14|A|478
4WRA|1|14|A|479
4WRA|1|14|A|480
4WRA|1|14|G|481
4WRA|1|14|A|482
4WRA|1|14|A|483
4WRA|1|14|C|484
*
4WRA|1|14|G|496
4WRA|1|14|A|497
4WRA|1|14|G|498
4WRA|1|14|U|499
4WRA|1|14|G|500
4WRA|1|14|A|501
4WRA|1|14|A|502
4WRA|1|14|A|503
4WRA|1|14|U|504
4WRA|1|14|A|505
4WRA|1|14|G|506
4WRA|1|14|A|507
4WRA|1|14|G|508
4WRA|1|14|C|509
4WRA|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24