J3_4WRA_059

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_059 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1909

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WRA|1|1G|C|990
4WRA|1|1G|U|991
4WRA|1|1G|U|992
4WRA|1|1G|G|993
4WRA|1|1G|A|994
4WRA|1|1G|C|995
4WRA|1|1G|A|996
4WRA|1|1G|U|997
*
4WRA|1|1G|A|1044
4WRA|1|1G|C|1045
4WRA|1|1G|A|1046
4WRA|1|1G|G|1047
*
4WRA|1|1G|C|1210
4WRA|1|1G|U|1211
4WRA|1|1G|U|1212
4WRA|1|1G|A|1213
4WRA|1|1G|C|1214
4WRA|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z