J3_4WSD_017

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WSD|1|1G|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_017 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1246

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WSD|1|1G|C|826
4WSD|1|1G|U|827
4WSD|1|1G|A|828
4WSD|1|1G|G|829
*
4WSD|1|1G|C|857
4WSD|1|1G|G|858
4WSD|1|1G|A|859
4WSD|1|1G|A|860
4WSD|1|1G|G|861
*
4WSD|1|1G|C|868
4WSD|1|1G|G|869
4WSD|1|1G|U|870
4WSD|1|1G|U|871
4WSD|1|1G|A|872
4WSD|1|1G|A|873
4WSD|1|1G|G|874

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 72

30S ribosomal protein S8