J3_4WSD_038

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WSD|1|13|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_038 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1688

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WSD|1|13|C|990
4WSD|1|13|U|991
4WSD|1|13|U|992
4WSD|1|13|G|993
4WSD|1|13|A|994
4WSD|1|13|C|995
4WSD|1|13|A|996
4WSD|1|13|U|997
*
4WSD|1|13|A|1044
4WSD|1|13|C|1045
4WSD|1|13|A|1046
4WSD|1|13|G|1047
*
4WSD|1|13|C|1210
4WSD|1|13|U|1211
4WSD|1|13|U|1212
4WSD|1|13|A|1213
4WSD|1|13|C|1214
4WSD|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z