J3_4WSD_041

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WSD|1|14|U|504, 4WSD|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_041 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0628

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WSD|1|14|G|30
4WSD|1|14|C|31
*
4WSD|1|14|G|474
4WSD|1|14|U|475
4WSD|1|14|G|476
4WSD|1|14|A|477
4WSD|1|14|A|478
4WSD|1|14|A|479
4WSD|1|14|A|480
4WSD|1|14|G|481
4WSD|1|14|A|482
4WSD|1|14|A|483
4WSD|1|14|C|484
*
4WSD|1|14|G|496
4WSD|1|14|A|497
4WSD|1|14|G|498
4WSD|1|14|U|499
4WSD|1|14|G|500
4WSD|1|14|A|501
4WSD|1|14|A|502
4WSD|1|14|A|503
4WSD|1|14|U|504
4WSD|1|14|A|505
4WSD|1|14|G|506
4WSD|1|14|A|507
4WSD|1|14|G|508
4WSD|1|14|C|509
4WSD|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24