J3_4WT1_019

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WT1|1|1G|U|871, 4WT1|1|1G|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_019 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1779

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WT1|1|1G|C|826
4WT1|1|1G|U|827
4WT1|1|1G|A|828
4WT1|1|1G|G|829
*
4WT1|1|1G|C|857
4WT1|1|1G|G|858
4WT1|1|1G|A|859
4WT1|1|1G|A|860
4WT1|1|1G|G|861
*
4WT1|1|1G|C|868
4WT1|1|1G|G|869
4WT1|1|1G|U|870
4WT1|1|1G|U|871
4WT1|1|1G|A|872
4WT1|1|1G|A|873
4WT1|1|1G|G|874

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 42

30S ribosomal protein S5

Chain 72

30S ribosomal protein S8